Membrane-dependent relief of translation elongation arrest on pseudouridine- and N1-methyl-pseudouridine-modified mRNAs
Yuri V Svitkin, Anne-Claude Gingras, and Nahum Sonenberg
Nucleic Acids Research, gkab1241, https://doi.org/10.1093/nar/gkab1241
Tissue-specific regulation of translational readthrough tunes functions of the traffic jam transcription factor
Prajwal Karki, Travis D Carney, Cristina Maracci, Andriy S Yatsenko, Halyna R Shcherbata, and Marina V Rodnina
Nucleic Acids Research, gkab1189, https://doi.org/10.1093/nar/gkab1189
Using a quadruplet codon to expand the genetic code of an animal
Zhiyan Xi, Lloyd Davis, Kieran Baxter, Ailish Tynan, Angeliki Goutou, Sebastian Greiss
Nucleic Acids Research, gkab1168, https://doi.org/10.1093/nar/gkab1168
Sensory neuron transcriptomes reveal complex neuron-specific function and regulation of mec-2/Stomatin splicing
Xiaoyu Liang, Canyon Calovich-Benne, Adam Norris
Nucleic Acids Research, gkab1134, https://doi.org/10.1093/nar/gkab1134
RNA marker modifications reveal the necessity for rigorous preparation protocols to avoid artifacts in epitranscriptomic analysis
Florian Richter, Johanna E Plehn, Larissa Bessler, Jasmin Hertler, Marko Jörg, Cansu Cirzi, Francesca Tuorto, Kristina Friedland, and Mark Helm
Nucleic Acids Research, gkab1150, https://doi.org/10.1093/nar/gkab1150
Formation and persistence of polyglutamine aggregates in mistranslating cells
Jeremy T Lant, Rashmi Kiri, Martin L Duennwald, and Patrick O’Donoghue
Nucleic Acids Research, Volume 49, Issue 20, 18 November 2021, Pages 11883–11899, https://doi.org/10.1093/nar/gkab898
RNase H is an exo- and endoribonuclease with asymmetric directionality, depending on the binding mode to the structural variants of RNA:DNA hybrids
Hyunjee Lee, HyeokJin Cho, Jooyoung Kim, Sua Lee, Jungmin Yoo, Daeho Park, and Gwangrog Lee
Nucleic Acids Research, gkab1064, https://doi.org/10.1093/nar/gkab1064
Adenovirus prevents dsRNA formation by promoting efficient splicing of viral RNA
Alexander M Price, Robert T Steinbock, Chao Di, Katharina E Hayer, Yize Li, Christin Herrmann, Nicholas A Parenti, Jillian N Whelan, Susan R Weiss, and Matthew D Weitzman
Nucleic Acids Research, gkab896, https://doi.org/10.1093/nar/gkab896
Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome
Keisuke Oki, Mariko Nagata, Takeshi Yamagami, Tomoyuki Numata, Sonoko Ishino, Takuji Oyama, and Yoshizumi Ishino
Nucleic Acids Research, gkab799, https://doi.org/10.1093/nar/gkab799
Pathways of thymidine hypermodification
Yan-Jiun Lee, Nan Dai, Stephanie I Müller, Chudi Guan, Mackenzie J Parker, Morgan E Fraser, Shannon E Walsh, Janani Sridar, Andrew Mulholland, Krutika Nayak, Zhiyi Sun, Yu-Cheng Lin, Donald G Comb, Katherine Marks, Reyaz Gonzalez, Daniel P Dowling, Vahe Bandarian, Lana Saleh, Ivan R Corrêa, Jr, and Peter R Weigele
Nucleic Acids Research, gkab1064, https://doi.org/10.1093/nar/gkab1064
Three human RNA polymerases interact with TFIIH via a common RPB6 subunit
Masahiko Okuda, Tetsufumi Suwa, Hidefumi Suzuki, Yuki Yamaguchi, and Yoshifumi Nishimura
Nucleic Acids Research, Volume 50, Issue 1, 11 January 2022, Pages 1–16, https://doi.org/10.1093/nar/gkab612
Mapping yeast mitotic 5′ resection at base resolution reveals the sequence and positional dependence of nucleases in vivo
Dominic Bazzano, Stephanie Lomonaco, and Thomas E Wilson
Nucleic Acids Research, Volume 49, Issue 22, 16 December 2021, Pages 12607–12621, https://doi.org/10.1093/nar/gkab597
Engineering large-scale chromosomal deletions by CRISPR-Cas9
Thomas F Eleveld, Chaimaa Bakali, Paul P Eijk, Phylicia Stathi, Lianne E Vriend, Pino J Poddighe, and Bauke Ylstra
Nucleic Acids Research, Volume 49, Issue 21, 2 December 2021, Pages 12007–12016, https://doi.org/10.1093/nar/gkab557
Directed evolution of orthogonal RNA–RBP pairs through library-vs-library in vitro selection
Keisuke Fukunaga, and Yohei Yokobayashi
Nucleic Acids Research, Volume 50, Issue 2, 25 January 2022, Pages 601–616, https://doi.org/10.1093/nar/gkab527
High-affinity five/six-letter DNA aptamers with superior specificity enabling the detection of dengue NS1 protein variants beyond the serotype identification
Ken-ichiro Matsunaga, Michiko Kimoto, Vanessa Weixun Lim, Hui Pen Tan, Yu Qian Wong, William Sun, Shawn Vasoo, Yee Sin Leo, and Ichiro Hirao
Nucleic Acids Research, Volume 49, Issue 20, 18 November 2021, Pages 11407–11424, https://doi.org/10.1093/nar/gkab515
The Fkh1 Forkhead associated domain promotes ORC binding to a subset of DNA replication origins in budding yeast
Timothy Hoggard, Allison J Hollatz, Rachel E Cherney, Melissa R Seman, and Catherine A Fox
Nucleic Acids Research, Volume 49, Issue 18, 11 October 2021, Pages 10207–10220, https://doi.org/10.1093/nar/gkab450
RNA-regulatory exosome complex confers cellular survival to promote erythropoiesis
Charu Mehta, Isabela Fraga de Andrade, Daniel R Matson, Colin N Dewey, and Emery H Bresnick
Nucleic Acids Research, Volume 49, Issue 16, 20 September 2021, Pages 9007–9025, https://doi.org/10.1093/nar/gkab367
Uniform affinity-tuning of N-methyl-aminoacyl-tRNAs to EF-Tu enhances their multiple incorporation
Yoshihiko Iwane, Hiroyuki Kimura, Takayuki Katoh, and Hiroaki Suga
Nucleic Acids Research, Volume 49, Issue 19, 8 November 2021, Pages 10807–10817, https://doi.org/10.1093/nar/gkab288
Grand scale genome manipulation via chromosome swapping in Escherichia coli programmed by three one megabase chromosomes
Tatsuya Yoneji, Hironobu Fujita, Takahito Mukai, and Masayuki Su’etsugu
Nucleic Acids Research, Volume 49, Issue 15, 7 September 2021, Pages 8407–8418, https://doi.org/10.1093/nar/gkab298
NMR solution structures of Runella slithyformis RNA 2′-phosphotransferase Tpt1 provide insights into NAD+ binding and specificity
Sébastien Alphonse, Ankan Banerjee, Swathi Dantuluri, Stewart Shuman, and Ranajeet Ghose
Nucleic Acids Research, Volume 49, Issue 17, 27 September 2021, Pages 9607–9624, https://doi.org/10.1093/nar/gkab241
Crucial role of Salmonella genomic island 1 master activator in the parasitism of IncC plasmids
Romain Durand, Kévin T Huguet, Nicolas Rivard, Nicolas Carraro, Sébastien Rodrigue, and Vincent Burrus
Nucleic Acids Research, Volume 49, Issue 14, 20 August 2021, Pages 7807–7824, https://doi.org/10.1093/nar/gkab204
microRNA-mediated translation repression through GYF-1 and IFE-4 in C. elegans development
Vinay K Mayya, Mathieu N Flamand, Alice M Lambert, Seyed Mehdi Jafarnejad, James A Wohlschlegel, Nahum Sonenberg, and Thomas F Duchaine
Nucleic Acids Research, Volume 49, Issue 9, 21 May 2021, Pages 4803–4815, https://doi.org/10.1093/nar/gkab162
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex
Jyotishman Veepaschit, Aravindan Viswanathan, Rémy Bordonné, Clemens Grimm, and Utz Fischer
Nucleic Acids Research, Volume 49, Issue 13, 21 July 2021, Pages 7207–7223, https://doi.org/10.1093/nar/gkab158
SIRT3 consolidates heterochromatin and counteracts senescence
Zhiqing Diao, Qianzhao Ji, Zeming Wu, Weiqi Zhang, Yusheng Cai, Zehua Wang, Jianli Hu, Zunpeng Liu, Qiaoran Wang, Shijia Bi, Daoyuan Huang, Zhejun Ji, Guang-Hui Liu, Si Wang, Moshi Song, and Jing Qu
Nucleic Acids Research, Volume 49, Issue 8, 7 May 2021, Pages 4203–4219, https://doi.org/10.1093/nar/gkab161
The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover
Julian Grützner, Fabian Billenkamp, Daniel-Timon Spanka, Tim Rick, Vivian Monzon, Konrad U Förstner, and Gabriele Klug
Nucleic Acids Research, Volume 49, Issue 6, 6 April 2021, Pages 3003–3019, https://doi.org/10.1093/nar/gkab146
Tandem RNA binding sites induce self-association of the stress granule marker protein TIA-1
Fionna E Loughlin, Danella L West, Menachem J Gunzburg, Saboora Waris, Simon A Crawford, Matthew C J Wilce, and Jacqueline A Wilce
Nucleic Acids Research, Volume 49, Issue 5, 18 March 2021, Pages 2403–2417, https://doi.org/10.1093/nar/gkab080
Power-law behavior of transcription factor dynamics at the single-molecule level implies a continuum affinity model
David A Garcia, Gregory Fettweis, Diego M Presman, Ville Paakinaho, Christopher Jarzynski, Arpita Upadhyaya, and Gordon L Hager
Nucleic Acids Research, Volume 49, Issue 12, 9 July 2021, Pages 6605–6620, https://doi.org/10.1093/nar/gkab072
Activation of the antiviral factor RNase L triggers translation of non-coding mRNA sequences
Agnes Karasik, Grant D Jones, Andrew V DePass, and Nicholas R Guydosh
Nucleic Acids Research, Volume 49, Issue 11, 21 June 2021, Pages 6007–6026, https://doi.org/10.1093/nar/gkab036