GLP-catalyzed H4K16me1 promotes 53BP1 recruitment to permit DNA damage repair and cell survival
Xiaopeng Lu, Ming Tang, Qian Zhu, Qiaoyan Yang, Zhiming Li, Yantao Bao, Ge Liu, Tianyun Hou, Yafei Lv, Ying Zhao, Haiying Wang, Yang Yang, Zhongyi Cheng, He Wen, Baohua Liu, Xingzhi Xu, Luo Gu, and Wei-Guo Zhu
Nucleic Acids Res (2019) 47(21): 10977–10993. doi:10.1093/nar/gkz897
Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria
William D Baez, Bappaditya Roy, Zakkary A McNutt, Elan A Shatoff, Shicheng Chen, Ralf Bundschuh, and Kurt Fredrick
Nucleic Acids Res (2019) 47 (20): 10477–10488. doi:10.1093/nar/gkz855
The ABCD database: a repository for chemically defined antibodies
Wanessa C Lima, Elisabeth Gasteiger, Paolo Marcatili, Paula Duek, Amos Bairoch, and Pierre Cosson
Nucleic Acids Res (2019) 48 (D1): D261-D264. doi:10.1093/nar/gkz827
DNA-PKcs promotes chromatin decondensation to facilitate initiation of the DNA damage response
Huiming Lu, Janapriya Saha, Pauline J Beckmann, Eric A Hendrickson, and Anthony J Davis
Nucleic Acids Res (2019) 47(18): 9467–9479. doi:10.1093/nar/gkz694
CtIP is essential for telomere replication
Susanna Stroik, Kevin Kurtz, and Eric A Hendrickso
Nucleic Acids Res (2019) 47(17): 8927–8940. doi:10.1093/nar/gkz652
Single-molecule visualization reveals the damage search mechanism for the human NER protein XPC-RAD23B
Na Young Cheon, Hyun-Suk Kim, Jung-Eun Yeo, Orlando D Schärer, and Ja Yil Lee
Nucleic Acids Res. (2019) 47(16): 8337-8347. doi:10.1093/nar/gkz629
The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112
Nhan van Tran, Felix G M Ernst, Ben R Hawley, Christiane Zorbas, Nathalie Ulryck, Philipp Hackert, Katherine E Bohnsack, Markus T Bohnsack, Samie R Jaffrey, Marc Graille and Denis L J Lafontaine
Nucleic Acids Res. (2019) 47(15): 7719-7733. doi:10.1093/nar/gkz619
Structural intermediates of a DNA–ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation
Adele Williamson, Hanna-Kirsti S Leiros
Nucleic Acids Res (2019) 47(14): 7147-7162. doi:10.1093/nar/gkz596
Structure and mechanism of pyrimidine–pyrimidone (6-4) photoproduct recognition by the Rad4/XPC nucleotide excision repair complex
Debamita Paul, Hong Mu, Hong Zhao, Ouathek Ouerfelli, Philip D Jeffrey, Suse Broyde and Jung-Hyun Min
Nucleic Acids Res (2019) 47(12): 6015–6028. doi:10.1093/nar/gkz359
Site-specific replacement of phosphorothioate with alkyl phosphonate linkages enhances the therapeutic profile of gapmer ASOs by modulating interactions with cellular proteins
Michael T. Migawa, Wen Shen, W. Brad Wan, Guillermo Vasquez, Michael E. Oestergaard, Audrey Low, Cheryl L. De Hoyos, Ruchi Gupta, Susan Murray, Michael Tanowitz, Melanie Bell, Joshua G. Nichols, Hans Gaus, Xue-hai Liang, Eric E. Swayze, Stanley T. Crooke and Punit P. Seth
Nucleic Acids Res (2019) 47(11): 5465–5479. doi:10.1093/nar/gkz247
The nuclear structural protein NuMA is a negative regulator of 53BP1 in DNA double-strand break repair
Naike Salvador Moreno, Jing Liu, Karen M Haas, Laurie L Parker, Chaitali Chakraborty, Stephen J Kron, Kurt Hodges, Lance D Miller, Carl Langefeld, Paul J Robinson, Sophie A Lelièvre, and Pierre-Alexandre Vidi
Nucleic Acids Res (2019) 47(6): 2703–2715. doi:10.1093/nar/gkz138
ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks
Masahiko Morita, Kazuro Shimokawa, Masaomi Nishimura, Sakiko Nakamura, Yuki Tsujimura, Satoko Takemoto, Takehiro Tawara, Hideo Yokota, Shuhei Wemler, Daisuke Miyamoto, Hidetoshi Ikeno, Akira Sato, Teiichi Furuichi, Norio Kobayashi, Yoshihiro Okumura, Yoko Yamaguchi, and Yuko Okamura-Oho
Nucleic Acids Res (2019) 47(D1): D859–D866. doi:10.1093/nar/gky951
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
Alberto Noronha, Jennifer Modamio, Yohan Jarosz, Elisabeth Guerard, Nicolas Sompairac, German Preciat, Anna Dröfn Daníelsdóttir, Max Krecke, Diane Merten, Hulda S Haraldsdóttir, Almut Heinken, Laurent Heirendt, Stefanía Magnúsdóttir, Dmitry A Ravcheev, Swagatika Sahoo, Piotr Gawron, Lucia Friscioni, Beatriz Garcia, Mabel Prendergast, Alberto Puente, Mariana Rodrigues. Akansha Roy, Mouss Rouquaya, Luca Wiltgen, Alise Žagare, Elisabeth John, Maren Krueger, Inna Kuperstein, Andrei Zinovyev, Reinhard Schneider, Ronan M T Fleming, and Ines Thiele
Nucleic Acids Res (2019) 47 (D1): D614–D624. doi:10.1093/nar/gky992
Inosine induces context-dependent recoding and translational stalling
Konstantin Licht, Markus Hartl, Fabian Amman, Dorothea Anrather, Michael P Janisiw. and Michael F Jantsch
Nucleic Acids Res (2019) 47 (1): 3–14. doi:10.1093/nar/gky1163