NAR’s Breakthrough Articles present high-impact studies answering long-standing questions in the field of nucleic acids research and/or opening up new areas and mechanistic hypotheses for investigation. These articles are chosen by the Editors on the recommendation of Editorial Board Members and Referees. Articles are accompanied by a brief synopsis explaining the findings of the paper and where they fit in the broader context of nucleic acids research. They represent the very best papers published at NAR.
Non-homologous end joining is a means to repair DNA that is damaged due to double-stranded breaks. At an early stage during this DNA repair process, the protein 53BP1 is recruited to the site of damaged DNA. This study reveals a novel mechanism for regulation of 53BP1 recognition of damaged DNA that occurs through a newly identified post-translational modification of histone protein within chromatin. It contributes important details of a novel global cellular regulation system in repair of damaged DNA.
Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria
In all cells, rates of translation initiation vary widely, due to differences in mRNA sequence and structure. Multiple features of mRNA are thought to govern initiation and may explain why translation initiation rates cannot be accurately predicted. This study finds that the identities of four nucleotides upstream of the start codon tune translation in F. johnsoniae. Positive determinants include A-3, reminiscent of the Kozak sequence found in eukaryotic mRNAs. E. coli uses the same Kozak-like seq to tune initiation, indicating that this mechanism is used across diverse lineages. Removal of contacts between the conserved beta-hairpin of ribosomal protein uS7 and mRNA fails to diminish the contribution of A-3, suggesting an indirect means of recognition by the ribosome. mRNA secondary structure helps tune initiation in all organisms analyzed, and the trinucleotide AUG is underrepresented in the vicinity of the start codon, presumably to compensate for the lack of Shine-Delgarno sequence ...
The ABCD (for AntiBodies Chemically Defined) database is a repository of sequenced antibodies, integrating curated information about the antibody and its antigen with cross-links to standardized databases of chemical and protein entities. It is freely available to the academic community, accessible through the ExPASy server (https://web.expasy.org/abcd/). The ABCD database aims at helping to improve reproducibility in academic research by providing a unique, unambiguous identifier associated to each antibody sequence. It also allows to determine rapidly if a sequenced antibody is available for a given antigen.